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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
Hi-C
Assay category
1600
DNA binding
1341
Transcription
517
DNA accessibility
48
DNA methylation
21
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
October, 2019
1
December, 2018
1
November, 2019
Available data
11
hic
10
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
fastq
Organism
21
Homo sapiens
Biosample type
13
tissue
6
primary cell
2
cell line
Organ
6
musculature of body
5
blood vessel
5
vasculature
4
epithelium
4
limb
3
brain
3
heart
3
liver
3
pancreas
2
vein
1
connective tissue
Project
21
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
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