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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
70
single cell RNA-seq
8
Hi-C
Assay category
201
Transcription
129
DNA binding
123
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Date released
39
February, 2023
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
16
September, 2020
7
July, 2019
6
May, 2021
5
December, 2019
4
October, 2019
3
August, 2018
3
March, 2020
3
October, 2022
2
November, 2019
2
October, 2018
1
June, 2018
Available data
148
bigWig
148
tsv
147
fastq
146
bam
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
hdf5
Organism
209
Homo sapiens
Biosample type
170
primary cell
35
cell line
2
in vitro differentiated cells
2
tissue
Organ
488
pancreas
482
connective tissue
401
adipose tissue
209
epithelium
197
liver
169
heart
126
kidney
72
blood vessel
72
vasculature
62
bone element
58
artery
27
brain
19
eye
15
musculature of body
14
embryo
11
limb
9
lung
5
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
Project
151
AMP
56
HPAP
2
T1D
Genome assembly (visualization)
154
hg19
146
GRCh38
Lab
153
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
209 results
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total RNA-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
1
pancreatic beta cell
21
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 14 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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