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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
74
single cell RNA-seq
9
Hi-C
2
small RNA-seq
Assay category
479
Transcription
218
DNA binding
173
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
157
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
22
November, 2019
16
September, 2020
6
March, 2020
6
May, 2022
4
July, 2019
3
August, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
February, 2020
1
June, 2018
1
March, 2019
1
October, 2019
Available data
412
bam
408
tsv
407
bigWig
253
fastq
7
bedpe bed3+
7
hic
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
488
Homo sapiens
Biosample type
295
tissue
158
primary cell
35
cell line
Organ
488
pancreas
482
connective tissue
401
adipose tissue
209
epithelium
197
liver
169
heart
126
kidney
72
blood vessel
72
vasculature
62
bone element
58
artery
27
brain
19
eye
15
musculature of body
14
embryo
11
limb
9
lung
5
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
Project
423
AMP
56
HPAP
9
T1D
Genome assembly (visualization)
414
hg19
407
GRCh38
Lab
417
AMP-T2D consortium
56
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
tissue
islet of Langerhans
284
3
body of pancreas
3
2
pancreas
2
1
primary cell
pancreatic alpha cell
52
12
1
pancreatic beta cell
21
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
Panc1
1
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