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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
509
ATAC-seq
202
DNase-seq
84
snATAC-seq
29
Hi-C
4
FAIRE-seq
Assay category
1888
Transcription
1589
DNA binding
799
DNA accessibility
97
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
85
August, 2021
49
February, 2021
October, 2019
34
May, 2021
28
November, 2019
16
January, 2021
16
July, 2019
14
March, 2020
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
3
January, 2018
3
October, 2022
3
September, 2020
2
November, 2020
1
August, 2022
1
December, 2018
1
March, 2023
Available data
477
bed narrowPeak
374
bam
340
bigWig
229
bigBed narrowPeak
206
bed bed3+
201
bed broadPeak
199
bigBed broadPeak
103
fastq
64
xls
60
zippedFastqFolder
19
hic
17
bedpe bed3+
14
tsv
12
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
1
bedpe
Organism
827
Homo sapiens
Biosample type
465
tissue
290
primary cell
41
in vitro differentiated cells
32
cell line
Organ
177
pancreas
161
kidney
123
epithelium
79
heart
56
vasculature
54
blood vessel
46
artery
42
limb
41
musculature of body
39
brain
32
connective tissue
32
liver
31
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
2
spleen
1
vein
Project
688
AMP
100
HPAP
29
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
457
hg19
428
GRCh38
Lab
550
AMP-T2D consortium
100
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
32
audit script error
1
inconsistent replicate
month_released!
October, 2019
BIOSAMPLE
ASSAY
828 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
Hi-C
FAIRE-seq
tissue
kidney
75
13
6
1
1
islet of Langerhans
55
1
7
3
1
coronary artery
36
2
liver
20
2
1
heart
18
+ See 61 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
1
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
See all biosamples
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