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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
11
snATAC-seq
9
Hi-C
8
DNase-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
173
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
22
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
March, 2019
5
March, 2020
5
October, 2017
5
October, 2019
5
September, 2017
4
June, 2019
3
November, 2018
3
October, 2022
3
September, 2020
1
August, 2021
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
52
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
3
cool
2
tsv
1
bedpe
1
hdf5
Organism
182
Homo sapiens
Biosample type
86
tissue
74
primary cell
22
cell line
Organ
182
pancreas
164
kidney
131
epithelium
80
heart
63
vasculature
61
blood vessel
49
artery
48
limb
41
musculature of body
40
brain
35
connective tissue
33
liver
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
5
vein
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
109
AMP
52
HPAP
21
T1D
Genome assembly (visualization)
87
hg19
68
GRCh38
Lab
84
AMP-T2D consortium
52
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ATAC-seq
snATAC-seq
Hi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
3
1
1
body of pancreas
4
4
pancreas
4
1
2
1
primary cell
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
pancreatic acinar cell
9
1
pancreatic ductal cell
4
cell line
EndoC_BH1
19
1
Panc1
1
1
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