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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ATAC-seq
56
snATAC-seq
9
DNase-seq
Assay category
206
Transcription
197
DNA accessibility
188
DNA binding
49
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Date released
60
May, 2022
55
May, 2020
27
February, 2021
16
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
June, 2019
3
September, 2020
2
October, 2019
Available data
60
zippedFastqFolder
37
fastq
17
bigWig
12
tsv
7
bam
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
Organism
197
Homo sapiens
Biosample type
tissue
181
primary cell
16
cell line
Organ
73
epithelium
65
pancreas
8
blood
8
bodily fluid
8
kidney
1
blood vessel
1
connective tissue
1
heart
1
vasculature
Project
97
HPAP
92
AMP
8
T1D
Genome assembly (visualization)
hg19
106
GRCh38
Lab
97
Klaus Kaestner, Upenn
92
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
22
inconsistent ontology term
assembly!
hg19
biosample_type!
tissue
BIOSAMPLE
ASSAY
197 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
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cell line
EndoC_BH1
16
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