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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ATAC-seq
73
snATAC-seq
26
DNase-seq
Assay category
526
DNA binding
506
Transcription
369
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
February, 2023
60
May, 2022
55
May, 2020
27
February, 2021
23
June, 2019
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
39
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
Organism
369
Homo sapiens
Biosample type
181
primary cell
172
tissue
16
cell line
Organ
94
pancreas
90
kidney
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
243
AMP
97
HPAP
29
T1D
Genome assembly (visualization)
hg19
441
GRCh38
Lab
160
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
assembly!
hg19
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
369 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 12 more…
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
pancreas
4
body of pancreas
2
+ See 16 more…
cell line
EndoC_BH1
16
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