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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
42
ATAC-seq
9
single cell RNA-seq
4
DNase-seq
Assay category
139
Transcription
59
DNA binding
46
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
85
May, 2021
44
February, 2021
11
February, 2023
9
October, 2019
8
May, 2020
8
November, 2019
6
July, 2018
6
March, 2020
4
June, 2019
2
December, 2019
1
February, 2020
1
June, 2018
Available data
153
bam
145
bigWig
144
tsv
16
bed narrowPeak
7
fastq
6
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
1
bed bedgraph
1
txt
Organism
185
Homo sapiens
Biosample type
101
in vitro differentiated cells
55
cell line
26
primary cell
3
tissue
Organ
57
pancreas
56
epithelium
6
connective tissue
4
kidney
2
embryo
1
adipose tissue
1
brain
1
heart
1
limb
1
liver
1
musculature of body
1
vasculature
Project
179
AMP
6
T1D
Genome assembly (visualization)
158
hg19
149
GRCh38
Lab
180
AMP-T2D consortium
4
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
185
inconsistent ontology term
36
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
185 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
+ See 7 more…
cell line
EndoC_BH1
33
19
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
2
naive B cel
2
2
gabaergic neuron
3
microglial cell/astrocyte
3
co-expressing pancreatic endocrine cell
2
+ See 8 more…
tissue
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
muscle of leg
1
See all biosamples
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