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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
34
snATAC-seq
Assay category
265
Transcription
173
DNA accessibility
172
DNA binding
5
3D chromatin structure
1
DNA sequencing
Date released
72
August, 2021
38
May, 2022
16
February, 2023
16
January, 2021
11
May, 2023
10
April, 2020
5
May, 2021
4
March, 2019
1
October, 2017
Available data
106
bed narrowPeak
64
xls
31
bigWig
20
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
172
Homo sapiens
Biosample type
155
tissue
10
in vitro differentiated cells
8
primary cell
Organ
81
kidney
44
pancreas
20
liver
10
lung
8
blood
8
bodily fluid
2
connective tissue
Project
134
AMP
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
78
GRCh38
51
hg19
Lab
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
award.project!
HPAP
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
173 results
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ATAC-seq
snATAC-seq
tissue
kidney
75
6
islet of Langerhans
34
6
liver
20
lung
10
pancreas
4
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
primary cell
peripheral blood mononuclear cell
8
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