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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ATAC-seq
20
snATAC-seq
4
FAIRE-seq
2
DNase-seq
Assay category
1227
Transcription
907
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
1
November, 2018
Available data
389
bed narrowPeak
245
bam
224
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
285
Homo sapiens
Biosample type
286
tissue
155
primary cell
42
in vitro differentiated cells
30
cell line
Organ
82
kidney
68
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
22
liver
12
bone element
12
epithelium
12
skeleton
10
lung
8
limb
6
adipose tissue
6
connective tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
263
AMP
13
T1D
10
LungMap
Genome assembly (visualization)
159
GRCh38
128
hg19
Lab
139
AMP-T2D consortium
81
Katalin Susztak, Upenn
31
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
award.project!
HPAP
month_released!
January, 2021
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
286 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
tissue
kidney
75
6
1
islet of Langerhans
68
3
1
1
coronary artery
36
liver
20
retina
15
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