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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ATAC-seq
179
DNase-seq
7
snATAC-seq
5
FAIRE-seq
Assay category
1704
DNA binding
1567
Transcription
661
DNA accessibility
44
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
154
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
38
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
November, 2018
8
July, 2019
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
2
January, 2018
2
November, 2020
1
August, 2022
Available data
459
bed narrowPeak
356
bam
306
bigWig
208
bigBed narrowPeak
175
bed bed3+
175
bed broadPeak
173
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
661
Homo sapiens
Biosample type
405
tissue
182
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
103
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
661
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
418
hg19
398
GRCh38
Lab
527
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
1
audit script error
1
inconsistent replicate
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
661 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
57
1
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 54 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 55 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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