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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ATAC-seq
181
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1552
DNA binding
1482
Transcription
544
DNA accessibility
39
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
163
June, 2019
93
February, 2023
82
August, 2021
39
May, 2022
26
November, 2019
26
October, 2019
21
February, 2021
21
May, 2021
11
May, 2023
10
April, 2020
10
November, 2018
8
January, 2021
8
July, 2019
8
October, 2017
6
August, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
Available data
423
bed narrowPeak
275
bam
242
bigWig
189
bigBed narrowPeak
182
bed bed3+
180
bed broadPeak
178
bigBed broadPeak
64
xls
42
fastq
11
bed bed3
7
bed bedgraph
4
txt
2
tsv
Organism
543
Homo sapiens
Biosample type
470
tissue
primary cell
43
in vitro differentiated cells
31
cell line
Organ
151
kidney
102
pancreas
74
heart
51
blood vessel
51
vasculature
49
artery
44
limb
34
musculature of body
32
brain
32
epithelium
31
eye
26
connective tissue
26
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
513
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
365
GRCh38
346
hg19
Lab
379
AMP-T2D consortium
81
Katalin Susztak, Upenn
44
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
31
inconsistent ontology term
2
audit script error
1
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
544 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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