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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ATAC-seq
35
snATAC-seq
26
DNase-seq
Assay category
489
DNA binding
327
Transcription
266
DNA accessibility
30
DNA methylation
6
3D chromatin structure
Date released
70
August, 2021
60
February, 2023
55
May, 2020
23
June, 2019
16
January, 2021
15
October, 2019
11
May, 2023
10
April, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
26
bam
25
bigWig
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
2
fastq
Organism
265
Homo sapiens
Biosample type
182
tissue
84
primary cell
cell line
Organ
90
kidney
38
heart
36
blood vessel
36
vasculature
35
artery
29
pancreas
13
brain
10
lung
8
blood
8
bodily fluid
8
epithelium
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
227
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
419
GRCh38
Lab
144
AMP-T2D consortium
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
1
audit script error
biosample_type!
cell line
assembly!
hg19
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
266 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 17 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
peripheral blood mononuclear cell
8
gabaergic neuron
3
+ See 8 more…
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