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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
1780
Transcription
458
DNA binding
319
DNA accessibility
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
61
May, 2022
30
February, 2023
27
February, 2021
16
January, 2021
16
May, 2021
16
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
6
August, 2021
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
October, 2017
1
August, 2017
1
August, 2022
1
July, 2019
Available data
bed narrowPeak
371
bam
337
bigWig
238
bigBed narrowPeak
207
bed broadPeak
205
bed bed3+
205
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
1
txt
Organism
318
Homo sapiens
Biosample type
219
primary cell
81
tissue
in vitro differentiated cells
19
cell line
Organ
99
pancreas
69
epithelium
19
kidney
10
lung
9
blood
9
bodily fluid
4
bone element
4
brain
4
skeleton
2
adipose tissue
2
connective tissue
2
musculature of body
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
183
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
62
hg19
26
GRCh38
Lab
161
AMP-T2D consortium
97
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
28
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 34 more…
tissue
islet of Langerhans
31
7
kidney
11
6
lung
10
pancreas
4
adipose tissue
2
+ See 9 more…
cell line
EndoC_BH1
18
GM12878
1
See all biosamples
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