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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
Assay category
1274
Transcription
39
DNA binding
26
DNA accessibility
17
DNA methylation
2
3D chromatin structure
Date released
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
2
October, 2017
1
July, 2019
Available data
bed narrowPeak
300
bam
257
bigWig
230
bigBed narrowPeak
205
bed broadPeak
204
bed bed3+
204
bigBed broadPeak
64
xls
52
fastq
2
bed bed3
Organism
26
Homo sapiens
Biosample type
16
tissue
10
primary cell
Organ
13
pancreas
11
kidney
10
epithelium
2
brain
Project
16
AMP
10
HPAP
Genome assembly (visualization)
62
hg19
26
GRCh38
Lab
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ATAC-seq
tissue
kidney
11
islet of Langerhans
3
cerebellum (Hemisphere)
1
posterior cingulate cortex
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
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