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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
DNase-seq
130
ATAC-seq
5
FAIRE-seq
Assay category
1275
DNA binding
1275
Transcription
343
DNA accessibility
17
DNA methylation
5
3D chromatin structure
Date released
187
June, 2019
45
May, 2020
20
May, 2022
14
September, 2018
12
October, 2019
10
November, 2018
9
August, 2017
8
July, 2019
8
October, 2017
7
August, 2020
5
February, 2023
5
September, 2017
4
March, 2020
3
January, 2018
3
September, 2020
2
February, 2021
1
November, 2020
Available data
470
bed narrowPeak
371
bam
337
bigWig
238
bigBed narrowPeak
207
bed broadPeak
205
bed bed3+
205
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
1
txt
Organism
343
Homo sapiens
Biosample type
229
tissue
108
primary cell
in vitro differentiated cells
6
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
36
brain
34
heart
34
musculature of body
27
liver
18
ureter
15
vasculature
13
blood vessel
13
connective tissue
6
adipose tissue
6
artery
4
bone element
4
eye
4
skeleton
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
333
AMP
10
HPAP
Genome assembly (visualization)
308
hg19
258
GRCh38
Lab
312
AMP-T2D consortium
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
10
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
343 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
20
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
+ See 49 more…
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 47 more…
cell line
EndoC_BH1
2
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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