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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
DNase-seq
123
ATAC-seq
5
FAIRE-seq
Assay category
1269
Transcription
1248
DNA binding
303
DNA accessibility
16
DNA methylation
5
3D chromatin structure
Date released
154
June, 2019
45
May, 2020
20
May, 2022
14
September, 2018
12
October, 2019
10
November, 2018
9
August, 2017
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2020
3
September, 2020
2
January, 2018
1
February, 2021
1
November, 2020
Available data
437
bed narrowPeak
338
bam
303
bigWig
205
bigBed narrowPeak
174
bed broadPeak
172
bigBed broadPeak
171
bed bed3+
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
Organism
303
Homo sapiens
Biosample type
191
tissue
107
primary cell
in vitro differentiated cells
5
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
35
brain
34
heart
musculature of body
26
liver
18
ureter
15
vasculature
13
blood vessel
13
connective tissue
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
293
AMP
10
HPAP
Genome assembly (visualization)
268
hg19
224
GRCh38
Lab
272
AMP-T2D consortium
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
303 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
20
heart
18
brain
14
kidney
13
1
renal cortex interstitium
11
+ See 40 more…
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 46 more…
cell line
EndoC_BH1
2
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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