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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
DNase-seq
123
ATAC-seq
5
FAIRE-seq
Assay category
1275
Transcription
1263
DNA binding
335
DNA accessibility
15
DNA methylation
5
3D chromatin structure
Date released
187
June, 2019
45
May, 2020
20
May, 2022
14
September, 2018
12
October, 2019
9
August, 2017
9
November, 2018
8
July, 2019
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
3
September, 2020
1
February, 2021
1
November, 2020
Available data
468
bed narrowPeak
369
bam
335
bigWig
237
bigBed narrowPeak
206
bed broadPeak
204
bed bed3+
204
bigBed broadPeak
99
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
1
txt
Organism
335
Homo sapiens
Biosample type
222
tissue
108
primary cell
in vitro differentiated cells
5
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
35
brain
34
heart
34
musculature of body
26
liver
18
ureter
15
vasculature
13
blood vessel
13
connective tissue
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
spleen
1
blood
1
bodily fluid
Project
325
AMP
10
HPAP
Genome assembly (visualization)
300
hg19
255
GRCh38
Lab
304
AMP-T2D consortium
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
10
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
spleen
BIOSAMPLE
ASSAY
335 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
20
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 44 more…
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 47 more…
cell line
EndoC_BH1
2
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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