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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
10
DNase-seq
1
FAIRE-seq
Assay category
242
DNA binding
36
DNA accessibility
28
Transcription
3
3D chromatin structure
Date released
187
June, 2019
100
May, 2020
99
May, 2022
93
February, 2023
70
August, 2021
45
February, 2021
29
May, 2021
29
October, 2019
21
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
19
bigWig
13
bam
13
bed narrowPeak
10
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
7
fastq
1
tar
Organism
36
Homo sapiens
Biosample type
20
tissue
14
primary cell
in vitro differentiated cells
2
cell line
Organ
14
epithelium
11
pancreas
6
blood vessel
6
limb
6
vasculature
3
artery
3
kidney
3
nerve
3
vein
1
adipose tissue
1
brain
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
29
AMP
7
HPAP
Genome assembly (visualization)
19
GRCh38
14
hg19
Lab
29
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
36 results
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ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
13
tibial artery
1
2
tibial nerve
1
2
adipose tissue
1
primary cell
pancreatic alpha cell
5
endothelial cell of umbilical vein
2
1
pancreatic beta cell
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
+ See 2 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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