Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ATAC-seq
56
snATAC-seq
34
DNase-seq
1
FAIRE-seq
Assay category
964
DNA binding
691
Transcription
362
DNA accessibility
59
DNA methylation
18
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
60
May, 2022
41
February, 2021
34
May, 2021
24
February, 2023
24
June, 2019
14
September, 2018
13
October, 2019
12
August, 2021
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2019
5
September, 2017
3
September, 2020
2
March, 2020
2
November, 2020
1
January, 2018
Available data
144
bam
126
bigWig
103
bed narrowPeak
61
fastq
60
zippedFastqFolder
57
bigBed narrowPeak
32
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
13
tsv
7
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
362
Homo sapiens
Biosample type
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
111
epithelium
91
pancreas
26
connective tissue
15
vasculature
13
blood vessel
13
kidney
11
heart
9
blood
9
bodily fluid
8
artery
5
brain
4
liver
3
vein
1
eye
1
musculature of body
Project
257
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
165
hg19
106
GRCh38
Lab
247
AMP-T2D consortium
97
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
362 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
See all biosamples
Download