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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
56
snATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
421
Transcription
258
DNA accessibility
246
DNA binding
57
DNA methylation
9
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
27
February, 2021
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
5
October, 2019
5
September, 2017
4
August, 2017
3
September, 2020
Available data
106
bam
101
bigWig
61
bed narrowPeak
60
fastq
60
zippedFastqFolder
46
bigBed narrowPeak
22
bed broadPeak
bigBed broadPeak
21
bed bed3+
12
tsv
1
tar
Organism
258
Homo sapiens
Biosample type
288
tissue
258
primary cell
30
cell line
25
in vitro differentiated cells
Organ
75
epithelium
71
pancreas
8
blood
8
bodily fluid
connective tissue
2
kidney
1
blood vessel
1
liver
1
vasculature
1
vein
Project
153
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
84
hg19
47
GRCh38
Lab
153
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
12
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
258 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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