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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
16
small RNA-seq
4
FAIRE-seq
Assay category
1227
Transcription
867
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
458
February, 2021
226
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
95
February, 2023
94
August, 2017
66
May, 2022
55
July, 2019
47
September, 2023
42
October, 2019
39
May, 2021
39
November, 2019
25
February, 2020
19
April, 2020
15
May, 2023
11
March, 2020
10
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
4
March, 2019
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1168
bam
1141
bigWig
1051
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
144
fastq
73
txt
64
xls
6
csv
5
bed bed3
Organism
1696
Homo sapiens
Biosample type
1697
tissue
724
primary cell
181
in vitro differentiated cells
146
cell line
2
stem cell
Organ
465
connective tissue
407
adipose tissue
373
pancreas
265
kidney
199
liver
175
heart
74
bone element
56
blood vessel
56
vasculature
53
brain
51
limb
50
eye
45
artery
41
musculature of body
19
lung
18
ureter
16
skeleton
14
epithelium
8
nerve
2
spleen
1
pituitary gland
1
skin of body
1
spinal cord
Project
1603
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1253
GRCh38
1206
hg19
Lab
1393
AMP-T2D consortium
141
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
audit script error
3
inconsistent ontology term
BIOSAMPLE
ASSAY
1697 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
382
3
islet of Langerhans
298
68
1
7
1
kidney
49
75
13
64
6
1
liver
167
20
2
1
1
bone tissue
58
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