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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
512
Transcription
443
DNA accessibility
253
DNA binding
79
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
81
May, 2022
72
August, 2021
55
May, 2020
31
February, 2021
21
May, 2021
18
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
7
August, 2020
4
March, 2020
3
January, 2018
3
March, 2019
3
September, 2020
1
August, 2017
1
August, 2022
1
October, 2017
Available data
492
bed narrowPeak
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
tar
Organism
442
Homo sapiens
Biosample type
225
tissue
174
primary cell
25
in vitro differentiated cells
19
cell line
Organ
98
pancreas
83
kidney
81
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
21
liver
20
connective tissue
10
lung
9
blood
9
bodily fluid
4
bone element
4
skeleton
3
adipose tissue
2
brain
2
musculature of body
1
pituitary gland
1
skin of body
Project
307
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
123
GRCh38
90
hg19
Lab
192
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
29
audit script error
27
inconsistent ontology term
files.file_type!
bam
tar
BIOSAMPLE
ASSAY
443 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
30
7
coronary artery
35
liver
20
retina
15
+ See 11 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 9 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
18
GM12878
1
See all biosamples
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