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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
516
Transcription
481
DNA binding
471
DNA accessibility
80
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
92
February, 2023
80
August, 2021
79
May, 2022
55
May, 2020
47
February, 2021
29
May, 2021
26
November, 2019
19
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
4
March, 2019
1
August, 2017
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
470
Homo sapiens
Biosample type
241
tissue
180
primary cell
25
cell line
25
in vitro differentiated cells
Organ
122
pancreas
83
kidney
71
epithelium
43
artery
43
blood vessel
43
heart
43
vasculature
28
eye
11
connective tissue
10
lung
8
blood
8
bodily fluid
8
bone element
8
skeleton
6
limb
2
adipose tissue
2
liver
1
brain
1
musculature of body
1
pituitary gland
1
skin of body
Project
345
AMP
87
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
182
GRCh38
127
hg19
Lab
242
AMP-T2D consortium
87
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
35
inconsistent ontology term
29
audit script error
files.file_type!
bed bed3
bigWig
BIOSAMPLE
ASSAY
471 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
65
7
coronary artery
35
retina
15
pigmented layer of retina
12
+ See 14 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
monocyte
13
+ See 13 more…
cell line
EndoC_BH1
17
smooth muscle cell of the coronary artery
8
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
5
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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