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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
ATAC-seq
212
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1918
Transcription
1831
DNA binding
756
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
99
May, 2022
95
February, 2023
47
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
18
August, 2021
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
xls
60
zippedFastqFolder
14
tsv
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
755
Homo sapiens
Biosample type
401
tissue
287
primary cell
38
in vitro differentiated cells
30
cell line
Organ
173
pancreas
123
epithelium
99
kidney
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
36
brain
35
musculature of body
32
eye
28
connective tissue
28
liver
18
ureter
10
lung
9
blood
9
bodily fluid
8
adipose tissue
8
bone element
8
skeleton
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
620
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
441
hg19
375
GRCh38
Lab
550
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Katalin Susztak, Upenn
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
files.file_type!
bed bed3
xls
BIOSAMPLE
ASSAY
756 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
68
1
7
1
coronary artery
36
2
kidney
11
13
6
1
liver
20
2
heart
18
+ See 56 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
+ See 6 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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