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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ATAC-seq
178
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1207
Transcription
907
DNA binding
450
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
20
November, 2019
20
October, 2019
19
May, 2022
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
369
bed narrowPeak
245
bam
204
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
449
Homo sapiens
Biosample type
450
tissue
288
primary cell
36
in vitro differentiated cells
31
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
5
liver
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
419
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
335
GRCh38
268
hg19
Lab
315
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
files.file_type!
bed bedgraph
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
450 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
heart
18
retina
15
3
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