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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ATAC-seq
83
snATAC-seq
8
DNase-seq
5
FAIRE-seq
Assay category
1818
DNA binding
602
DNA accessibility
372
Transcription
91
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
98
May, 2022
86
February, 2023
82
August, 2021
45
February, 2021
34
May, 2021
26
November, 2019
26
October, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
3
January, 2018
3
September, 2020
2
March, 2020
1
August, 2022
1
November, 2018
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
tsv
12
bed bed3
bed bedgraph
4
txt
1
tar
Organism
601
Homo sapiens
Biosample type
292
tissue
249
primary cell
32
in vitro differentiated cells
29
cell line
Organ
164
pancreas
106
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
18
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
466
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
258
hg19
237
GRCh38
Lab
335
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
32
inconsistent ontology term
28
audit script error
1
inconsistent replicate
files.file_type!
bed bedgraph
tsv
bed bed3+
BIOSAMPLE
ASSAY
602 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
67
7
1
1
coronary artery
36
liver
20
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
adipocyte
3
1
+ See 3 more…
cell line
EndoC_BH1
18
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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