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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ATAC-seq
28
snATAC-seq
4
FAIRE-seq
2
DNase-seq
Assay category
1227
Transcription
832
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
8
July, 2019
7
October, 2017
5
August, 2017
3
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
1
November, 2018
Available data
389
bed narrowPeak
245
bam
224
bigWig
184
bigBed narrowPeak
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
291
Homo sapiens
Biosample type
292
tissue
260
primary cell
42
in vitro differentiated cells
30
cell line
Organ
82
kidney
74
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
22
liver
12
bone element
12
epithelium
12
skeleton
10
lung
8
limb
6
adipose tissue
6
connective tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
261
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
158
GRCh38
127
hg19
Lab
139
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
audit script error
1
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
292 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
tissue
kidney
75
6
1
islet of Langerhans
66
7
1
1
coronary artery
36
liver
20
retina
15
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