Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ATAC-seq
28
snATAC-seq
27
WGBS
11
RRBS
4
FAIRE-seq
2
DNase-seq
Assay category
1227
Transcription
872
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
81
February, 2023
70
August, 2021
39
May, 2022
26
July, 2019
20
November, 2019
19
August, 2017
16
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
7
November, 2018
7
October, 2017
3
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
389
bed narrowPeak
262
bam
240
bigWig
184
bigBed narrowPeak
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
54
fastq
25
bed bedMethyl
25
bigBed bedMethyl
5
bed bed3
1
tsv
1
txt
Organism
329
Homo sapiens
Biosample type
330
tissue
318
primary cell
42
in vitro differentiated cells
31
cell line
Organ
83
kidney
80
pancreas
48
heart
40
blood vessel
40
vasculature
37
artery
28
eye
27
liver
12
adipose tissue
12
bone element
12
connective tissue
12
epithelium
12
skeleton
10
lung
9
limb
7
musculature of body
6
brain
3
spleen
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
Project
299
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
174
GRCh38
136
hg19
Lab
177
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
audit script error
1
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
330 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
WGBS
RRBS
FAIRE-seq
DNase-seq
tissue
kidney
75
6
1
1
islet of Langerhans
66
7
1
1
1
coronary artery
36
liver
20
3
1
retina
15
+ See 39 more…
See all biosamples
Download