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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ATAC-seq
83
snATAC-seq
6
DNase-seq
5
FAIRE-seq
Assay category
1914
Transcription
1756
DNA binding
623
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
26
November, 2019
26
October, 2019
16
January, 2021
14
September, 2018
11
May, 2023
9
April, 2020
9
August, 2017
8
July, 2019
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
3
March, 2019
3
September, 2020
1
August, 2022
1
November, 2018
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
623
Homo sapiens
Biosample type
291
tissue
260
primary cell
42
in vitro differentiated cells
30
cell line
Organ
164
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
9
blood
9
bodily fluid
9
lung
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
488
AMP
97
HPAP
29
T1D
9
LungMap
Genome assembly (visualization)
269
hg19
235
GRCh38
Lab
356
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
623 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
66
7
1
1
coronary artery
36
liver
20
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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