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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ATAC-seq
56
snATAC-seq
2
DNase-seq
Assay category
436
Transcription
219
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
27
February, 2021
12
February, 2023
8
January, 2021
7
August, 2020
3
September, 2020
2
October, 2019
Available data
114
bam
108
bigWig
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
219
Homo sapiens
Biosample type
219
primary cell
81
tissue
21
in vitro differentiated cells
19
cell line
Organ
51
epithelium
49
pancreas
8
blood
8
bodily fluid
2
kidney
Project
114
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
45
hg19
10
GRCh38
Lab
114
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
10
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
219 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
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