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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ATAC-seq
57
snATAC-seq
3
DNase-seq
1
whole genome sequencing assay
Assay category
405
DNA accessibility
384
Transcription
291
DNA binding
67
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
81
May, 2022
73
August, 2021
55
May, 2020
21
May, 2021
18
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
4
February, 2021
4
March, 2020
3
January, 2018
3
March, 2019
1
August, 2017
1
August, 2022
Available data
492
bed narrowPeak
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
1
vcf
Organism
405
Homo sapiens
Biosample type
224
tissue
137
primary cell
25
in vitro differentiated cells
20
cell line
Organ
87
pancreas
83
kidney
71
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
22
liver
20
connective tissue
10
lung
9
blood
9
bodily fluid
4
bone element
4
skeleton
3
adipose tissue
2
brain
2
musculature of body
1
pituitary gland
1
skin of body
Project
307
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
112
GRCh38
89
hg19
Lab
192
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent ontology term
2
audit script error
files.file_type!
fastq
bam
BIOSAMPLE
ASSAY
406 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
whole genome sequencing assay
tissue
kidney
75
6
islet of Langerhans
29
7
coronary artery
35
liver
20
retina
15
+ See 11 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
pancreatic beta cell
13
+ See 9 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
18
GM12878
1
HepG2
1
See all biosamples
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