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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ATAC-seq
56
snATAC-seq
26
DNase-seq
Assay category
394
DNA binding
370
Transcription
324
DNA accessibility
61
DNA methylation
6
3D chromatin structure
Date released
70
August, 2021
60
February, 2023
60
May, 2022
55
May, 2020
23
June, 2019
16
January, 2021
15
October, 2019
11
May, 2023
10
April, 2020
1
August, 2017
1
August, 2022
1
July, 2019
1
March, 2019
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
Organism
323
Homo sapiens
Biosample type
180
tissue
144
primary cell
cell line
Organ
90
kidney
67
pancreas
47
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
12
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
225
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
376
GRCh38
hg19
Lab
143
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
files.file_type!
fastq
assembly!
hg19
biosample_type!
cell line
BIOSAMPLE
ASSAY
324 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
25
7
lung
10
pancreas
4
+ See 16 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
pancreatic beta cell
13
+ See 12 more…
See all biosamples
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