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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
42
ATAC-seq
2
single cell RNA-seq
Assay category
123
Transcription
78
DNA binding
42
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
19
August, 2021
16
February, 2023
6
October, 2019
5
November, 2019
2
December, 2019
2
March, 2020
Available data
145
bam
140
bigWig
129
tsv
22
bed narrowPeak
fastq
7
bed bedgraph
5
bed bed3
4
bed bed3+
3
bigBed narrowPeak
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
165
Homo sapiens
Biosample type
1553
tissue
416
primary cell
165
in vitro differentiated cells
141
cell line
2
stem cell
Organ
26
connective tissue
2
embryo
2
epithelium
1
heart
Project
165
AMP
Genome assembly (visualization)
154
hg19
129
GRCh38
Lab
150
AMP-T2D consortium
10
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
adipocyte
5
8
embryonic stem cell
5
6
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