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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
ATAC-seq
57
snATAC-seq
3
DNase-seq
Assay category
1547
Transcription
701
DNA binding
527
DNA accessibility
76
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
82
August, 2021
81
May, 2022
34
May, 2021
26
November, 2019
22
February, 2021
21
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
6
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
1
August, 2017
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
526
Homo sapiens
Biosample type
259
tissue
199
primary cell
40
in vitro differentiated cells
29
cell line
Organ
107
pancreas
83
kidney
73
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
liver
20
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
3
adipose tissue
3
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
Project
428
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
210
hg19
192
GRCh38
Lab
314
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
42
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
fastq
bigBed narrowPeak
BIOSAMPLE
ASSAY
527 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
48
7
coronary artery
36
liver
20
retina
15
+ See 26 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
monocyte
15
+ See 37 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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