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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
11
snATAC-seq
5
DNase-seq
Assay category
226
Transcription
112
DNA accessibility
71
DNA binding
43
DNA methylation
9
3D chromatin structure
Date released
39
May, 2022
20
November, 2019
16
May, 2021
13
February, 2023
8
January, 2021
4
June, 2019
4
March, 2020
4
October, 2019
3
March, 2019
1
August, 2022
Available data
75
bam
74
bed narrowPeak
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
112
Homo sapiens
Biosample type
53
tissue
39
primary cell
20
cell line
Organ
163
kidney
112
pancreas
91
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
52
AMP
39
HPAP
21
T1D
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
49
AMP-T2D consortium
39
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
38
7
pancreas
4
2
body of pancreas
2
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
EndoC_BH1
19
Panc1
1
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