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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
11
snATAC-seq
2
DNase-seq
Assay category
83
DNA accessibility
41
DNA methylation
27
DNA binding
14
Transcription
1
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
13
February, 2023
8
January, 2021
3
October, 2019
2
June, 2019
1
August, 2022
1
March, 2019
Available data
39
zippedFastqFolder
12
bigWig
fastq
3
bam
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
83
Homo sapiens
Biosample type
39
primary cell
28
tissue
16
cell line
Organ
90
kidney
83
pancreas
63
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
12
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
39
HPAP
23
AMP
21
T1D
Genome assembly (visualization)
hg19
27
GRCh38
Lab
39
Klaus Kaestner, Upenn
22
AMP-T2D consortium
21
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
Audit category:
16
inconsistent ontology term
1
audit script error
files.file_type!
fastq
assembly!
hg19
BIOSAMPLE
ASSAY
83 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
islet of Langerhans
15
7
pancreas
4
body of pancreas
2
cell line
EndoC_BH1
16
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