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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
11
snATAC-seq
1
DNase-seq
Assay category
226
Transcription
108
DNA accessibility
71
DNA binding
43
DNA methylation
9
3D chromatin structure
Date released
39
May, 2022
20
November, 2019
16
May, 2021
13
February, 2023
8
January, 2021
June, 2019
4
March, 2020
4
October, 2019
3
March, 2019
1
August, 2022
Available data
71
bam
70
bed narrowPeak
fastq
47
bigWig
39
zippedFastqFolder
28
bigBed narrowPeak
5
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
2
tsv
Organism
108
Homo sapiens
Biosample type
49
tissue
39
primary cell
20
cell line
Organ
108
pancreas
85
kidney
77
epithelium
51
blood vessel
51
vasculature
47
artery
47
heart
28
eye
24
connective tissue
23
liver
12
bone element
12
limb
12
skeleton
10
lung
9
blood
9
bodily fluid
4
adipose tissue
4
brain
3
nerve
3
vein
2
musculature of body
1
pituitary gland
1
skin of body
Project
48
AMP
39
HPAP
21
T1D
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
45
AMP-T2D consortium
39
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
fastq
month_released!
June, 2019
BIOSAMPLE
ASSAY
108 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
38
7
pancreas
4
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
EndoC_BH1
19
Panc1
1
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