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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
DNase-seq
175
ATAC-seq
4
FAIRE-seq
Assay category
1561
DNA binding
1406
Transcription
386
DNA accessibility
18
DNA methylation
Date released
187
June, 2019
45
May, 2020
26
November, 2019
18
February, 2021
18
May, 2022
14
September, 2018
13
May, 2021
12
October, 2019
10
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
2
November, 2020
1
March, 2019
Available data
489
bed narrowPeak
386
bam
347
bigWig
238
bigBed narrowPeak
207
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
386
Homo sapiens
Biosample type
245
tissue
111
primary cell
18
in vitro differentiated cells
12
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
35
brain
33
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
vein
2
spleen
Project
386
AMP
Genome assembly (visualization)
360
hg19
316
GRCh38
Lab
367
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
organ_slims!
vein
BIOSAMPLE
ASSAY
386 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
38
1
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 52 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 48 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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