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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ATAC-seq
178
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1226
Transcription
907
DNA binding
467
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
2
January, 2018
2
March, 2020
1
August, 2022
1
March, 2019
Available data
389
bed narrowPeak
244
bam
224
bigWig
184
bigBed narrowPeak
177
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
64
xls
40
fastq
5
bed bed3
1
tsv
1
txt
Organism
466
Homo sapiens
Biosample type
467
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
150
kidney
79
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
436
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
333
GRCh38
286
hg19
Lab
315
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
Mark McCarthy, Oxford
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
467 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
65
1
7
1
coronary artery
36
2
liver
20
2
heart
18
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