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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ATAC-seq
26
DNase-seq
1
snATAC-seq
Assay category
485
DNA binding
171
Transcription
160
DNA accessibility
31
DNA methylation
5
3D chromatin structure
Date released
55
May, 2020
47
February, 2023
23
June, 2019
16
May, 2021
15
October, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
58
bed narrowPeak
25
bam
25
bigWig
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
1
fastq
Organism
160
Homo sapiens
Biosample type
76
primary cell
68
tissue
16
cell line
Organ
38
heart
36
blood vessel
36
vasculature
35
artery
24
epithelium
22
pancreas
13
brain
9
kidney
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
160
AMP
Genome assembly (visualization)
hg19
353
GRCh38
Lab
160
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
1
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
DNase-seq
snATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
gabaergic neuron
3
glutamatergic neuron
3
+ See 7 more…
tissue
coronary artery
35
islet of Langerhans
13
1
body of pancreas
2
heart
2
Ammon's horn
1
+ See 14 more…
cell line
EndoC_BH1
16
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