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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
527
ATAC-seq
212
DNase-seq
84
snATAC-seq
75
WGBS
21
RRBS
5
FAIRE-seq
1
DNAme array
Assay category
1903
Transcription
1868
DNA binding
828
DNA accessibility
97
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
140
May, 2022
105
February, 2023
100
May, 2020
82
August, 2021
55
February, 2021
35
July, 2019
35
May, 2021
33
October, 2019
26
August, 2017
26
November, 2019
17
November, 2018
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
407
bam
363
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
123
fastq
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
18
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
924
Homo sapiens
Biosample type
506
tissue
346
primary cell
43
in vitro differentiated cells
30
cell line
Organ
222
pancreas
174
epithelium
167
kidney
87
heart
61
vasculature
58
blood vessel
49
artery
45
limb
41
connective tissue
41
musculature of body
39
brain
36
liver
33
eye
18
ureter
14
adipose tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
4
spleen
3
nerve
3
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
742
AMP
144
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
468
hg19
458
GRCh38
Lab
608
AMP-T2D consortium
144
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
March, 2020
BIOSAMPLE
ASSAY
925 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
WGBS
RRBS
FAIRE-seq
DNAme array
tissue
kidney
75
13
6
1
1
islet of Langerhans
66
1
7
1
1
coronary artery
36
2
liver
20
2
3
1
heart
18
1
+ See 64 more…
primary cell
pancreatic alpha cell
35
31
Langerhans cell
48
pancreatic beta cell
23
16
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
17
smooth muscle cell of the coronary artery
8
HepG2
1
1
GM12878
1
Panc1
1
+ See 1 more…
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