Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ATAC-seq
178
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1218
Transcription
905
DNA binding
467
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
7
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
March, 2020
1
August, 2022
Available data
389
bed narrowPeak
245
bam
221
bigWig
184
bigBed narrowPeak
177
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
64
xls
40
fastq
5
bed bed3
1
txt
Organism
466
Homo sapiens
Biosample type
467
tissue
288
primary cell
43
in vitro differentiated cells
29
cell line
Organ
150
kidney
79
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
436
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
334
GRCh38
285
hg19
Lab
313
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
March, 2020
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
467 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
65
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
See all biosamples
Download