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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ATAC-seq
83
snATAC-seq
26
DNase-seq
Assay category
513
Transcription
503
DNA binding
324
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
February, 2023
60
May, 2022
May, 2020
27
February, 2021
23
June, 2019
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
39
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
Organism
323
Homo sapiens
Biosample type
182
tissue
126
primary cell
16
cell line
Organ
94
pancreas
90
kidney
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
188
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
441
GRCh38
hg19
Lab
105
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
month_released!
May, 2020
assembly!
hg19
BIOSAMPLE
ASSAY
324 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 17 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
29
pancreatic beta cell
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 9 more…
cell line
EndoC_BH1
16
See all biosamples
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