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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ATAC-seq
84
snATAC-seq
24
DNase-seq
5
FAIRE-seq
Assay category
1914
Transcription
1800
DNA binding
643
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
November, 2020
1
August, 2022
Available data
303
bed narrowPeak
200
bam
162
bigWig
102
fastq
64
xls
60
zippedFastqFolder
53
bigBed narrowPeak
21
bed bed3+
20
bed broadPeak
18
bigBed broadPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
642
Homo sapiens
Biosample type
307
tissue
262
primary cell
43
in vitro differentiated cells
31
cell line
Organ
169
pancreas
109
epithelium
85
kidney
51
blood vessel
51
vasculature
47
artery
47
heart
28
eye
27
liver
26
connective tissue
12
bone element
12
limb
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
7
brain
3
nerve
3
vein
2
musculature of body
2
spleen
1
pituitary gland
1
skin of body
Project
507
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
287
hg19
252
GRCh38
Lab
373
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
November, 2020
June, 2019
BIOSAMPLE
ASSAY
643 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
2
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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