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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ATAC-seq
208
DNase-seq
76
snATAC-seq
5
FAIRE-seq
1
whole genome sequencing assay
Assay category
1860
Transcription
1777
DNA binding
774
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
185
June, 2019
100
May, 2020
99
May, 2022
83
August, 2021
70
February, 2023
41
February, 2021
34
May, 2021
30
October, 2019
26
November, 2019
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
January, 2021
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
2
January, 2018
2
November, 2020
1
August, 2022
Available data
443
bed narrowPeak
375
bam
343
bigWig
237
bigBed narrowPeak
205
bed bed3+
204
bed broadPeak
202
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
1
vcf
Organism
774
Homo sapiens
Biosample type
429
tissue
280
primary cell
43
in vitro differentiated cells
23
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
30
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
647
AMP
97
HPAP
21
T1D
10
LungMap
Genome assembly (visualization)
438
hg19
392
GRCh38
Lab
512
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
44
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
artery
bodily fluid
BIOSAMPLE
ASSAY
775 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
whole genome sequencing assay
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
heart
18
retina
15
3
+ See 58 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
HepG2
1
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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