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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
482
ATAC-seq
176
DNase-seq
84
snATAC-seq
4
FAIRE-seq
1
whole genome sequencing assay
Assay category
1836
Transcription
1619
DNA binding
746
DNA accessibility
95
DNA methylation
31
3D chromatin structure
1
DNA sequencing
Date released
155
June, 2019
100
May, 2020
99
May, 2022
83
August, 2021
69
February, 2023
41
February, 2021
34
May, 2021
29
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
8
November, 2018
7
August, 2020
7
October, 2017
5
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
410
bed narrowPeak
340
bam
309
bigWig
204
bigBed narrowPeak
173
bed bed3+
172
bed broadPeak
170
bigBed broadPeak
99
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
1
vcf
Organism
746
Homo sapiens
Biosample type
397
tissue
283
primary cell
43
in vitro differentiated cells
24
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
artery
44
limb
brain
35
musculature of body
34
connective tissue
32
eye
30
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
611
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
415
hg19
358
GRCh38
Lab
476
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
artery
brain
BIOSAMPLE
ASSAY
747 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
whole genome sequencing assay
tissue
kidney
75
13
6
1
islet of Langerhans
67
1
7
1
liver
20
2
heart
18
retina
15
3
+ See 44 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
HepG2
1
1
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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