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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ATAC-seq
208
DNase-seq
62
snATAC-seq
5
FAIRE-seq
Assay category
1672
DNA binding
1618
Transcription
650
DNA accessibility
55
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
185
June, 2019
100
May, 2020
May, 2022
82
August, 2021
70
February, 2023
41
February, 2021
May, 2021
30
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
392
bed narrowPeak
344
bam
319
bigWig
237
bigBed narrowPeak
204
bed bed3+
204
bed broadPeak
202
bigBed broadPeak
84
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
649
Homo sapiens
Biosample type
390
tissue
215
primary cell
38
in vitro differentiated cells
7
cell line
Organ
163
kidney
100
pancreas
77
heart
68
epithelium
58
vasculature
56
blood vessel
artery
44
limb
37
brain
34
connective tissue
34
musculature of body
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
574
AMP
37
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
382
hg19
379
GRCh38
Lab
483
AMP-T2D consortium
81
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
28
audit script error
1
inconsistent replicate
organ_slims!
artery
month_released!
May, 2021
May, 2022
BIOSAMPLE
ASSAY
650 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
50
1
7
1
heart
18
retina
15
3
muscle of arm
17
+ See 58 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
13
macrophage
11
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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