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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
27
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
785
DNA binding
224
Transcription
70
DNA accessibility
15
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
10
November, 2018
8
October, 2017
6
August, 2017
1
March, 2019
Available data
438
bed narrowPeak
347
bam
298
bigWig
201
bigBed narrowPeak
193
bed bed3+
192
bed broadPeak
190
bigBed broadPeak
70
fastq
64
xls
21
zippedFastqFolder
13
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
70
Homo sapiens
Biosample type
41
tissue
28
primary cell
1
in vitro differentiated cells
Organ
61
pancreas
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
43
AMP
27
HPAP
Genome assembly (visualization)
41
hg19
21
GRCh38
Lab
27
Klaus Kaestner, Upenn
23
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
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primary cell
Langerhans cell
27
skeletal muscle myoblast
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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