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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ATAC-seq
151
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1118
Transcription
784
DNA binding
404
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Date released
136
June, 2019
70
August, 2021
46
February, 2023
39
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
October, 2017
5
August, 2017
4
July, 2019
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
323
bed narrowPeak
214
bam
193
bigWig
157
bigBed narrowPeak
151
bed broadPeak
150
bed bed3+
149
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
403
Homo sapiens
Biosample type
404
tissue
285
primary cell
43
in vitro differentiated cells
23
cell line
Organ
150
kidney
82
pancreas
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
373
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
269
GRCh38
259
hg19
Lab
249
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
404 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
retina
15
3
muscle of arm
17
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